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    uncharacterized protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850922, updated on 2-Nov-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    SGD:S000004215
    Locus tag
    YLR225C
    See related
    AllianceGenome:SGD:S000004215; FungiDB:YLR225C; VEuPathDB:YLR225C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to be involved in response to oxidative stress. Located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (587695..588918, complement)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene Ifh1p Neighboring gene Ucc1p Neighboring gene Bur2p Neighboring gene Ady4p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001144.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of interactors for yeast protein arginine methyltransferase Hmt1 reveals novel substrate and insights into additional biological roles. Jackson CA, et al. Proteomics, 2012 Nov. PMID 22997150
    2. Functional profiling of the Saccharomyces cerevisiae genome. Giaever G, et al. Nature, 2002 Jul 25. PMID 12140549
    3. RNA-binding and prion domains: the Yin and Yang of phase separation. Gotor NL, et al. Nucleic Acids Res, 2020 Sep 25. PMID 32857852, Free PMC Article
    4. The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Johnston M, et al. Nature, 1997 May 29. PMID 9169871, Free PMC Article
    5. Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. Kaake RM, et al. J Proteome Res, 2010 Apr 5. PMID 20170199, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_013326.1
    • hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; not an essential gene; YLR225C has a paralog, YDR222W, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      587695..588918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182112.1 → NP_013326.1  TPA: uncharacterized protein YLR225C [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013326.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VYM5, Q05948
      UniProtKB/TrEMBL
      A7A1B2, B3RHB3, B5VNE4, C7GIV3, G2WJ54, N1NZF5
      Conserved Domains (2) summary
      pfam08622
      Location:65 → 261
      Svf1; Svf1-like N-terminal lipocalin domain
      pfam17187
      Location:265 → 406
      Svf1_C; Svf1-like C-terminal lipocalin-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05948.1

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