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    LOC4341355 protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341355, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341355
    Gene description
    protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
    Locus tag
    OSNPB_060571800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 3.2), roots after flowering (RPKM 3.0) and 4 other tissues See more
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    Genomic context

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    See LOC4341355 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (23011525..23015853)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22146381..22157082)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341353 Neighboring gene elongation factor 1-gamma 3-like Neighboring gene uncharacterized LOC136357029 Neighboring gene uncharacterized LOC112939388

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
    Names
    OSJNBa0006A22.6-1
    OSJNBa0006A22.6-2
    Os06g0571800
    P0610D01.14-1
    P0610D01.14-2
    putative GATA transcription factor 22
    zinc finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      23011525..23015853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785842.3 → XP_015641328.1  protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like

      UniProtKB/TrEMBL
      B8B3U7, B9FTU8
      Conserved Domains (1) summary
      smart00401
      Location:198 → 249
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    Nucleotide Protein
    Heading Accession and Version

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