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    LOC4332475 mitogen-activated protein kinase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332475, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332475
    Gene description
    mitogen-activated protein kinase 5-like
    Locus tag
    OSNPB_030285800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MPK3; MPK5; BIMK1; MAPK2; MAPK5; OsMAP1; OsMPK3; msrmk2; OsBIMK1; OsMAPK2; OsMAPK5; OsMSRMK2; OsJ_10412
    Expression
    Biased expression in roots before flowering (RPKM 896.6) and flowers (RPKM 42.7) See more
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    Genomic context

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    See LOC4332475 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9898376..9901149, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9847712..9850468, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332473 Neighboring gene L-ascorbate peroxidase 1, cytosolic-like Neighboring gene serine/arginine-rich splicing factor RS2Z32 Neighboring gene E3 ubiquitin-protein ligase SIRP1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues. Agrawal GK, et al. Biochem Biophys Res Commun, 2002 Jun 28. PMID 12074577
    2. Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice. Xie G, et al. Biochem J, 2012 Apr 1. PMID 22248149
    3. Mitogen-activated protein kinase TaMPK3 suppresses ABA response by destabilising TaPYL4 receptor in wheat. Liu Y, et al. New Phytol, 2022 Oct. PMID 35719110, Free PMC Article
    4. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    5. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. our data suggest that OsMKK6 and OsMPK3 constitute a moderately low-temperature signalling pathway and regulate cold stress tolerance in rice. [OsMPK3]
      Title: Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase 5
    Names
    Benzothiadiazole-induced MAP kinase 1
    LOC_Os03g17700
    MAP kinase 2
    MAP kinase 5
    Multiple stress-responsive MAP kinase 2
    OSJNBa0013D02.9
    mitogen-activated protein kinase 3
    NP_001389066.1
    XP_015630495.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402137.1 → NP_001389066.1  mitogen-activated protein kinase 5

      Status: VALIDATED

      Source sequence(s)
      CB675228, CB675229, CI136306, CI669672
      UniProtKB/Swiss-Prot
      A2XFC8, B7EDC7, Q0PIU7, Q10N20, Q7FNE2, Q8GZZ3, Q8S3T6, Q9AXF2, Q9FQM3, Q9FSE6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9898376..9901149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775009.3 → XP_015630495.1  mitogen-activated protein kinase 5 isoform X1

      Conserved Domains (2) summary
      smart00220
      Location:41 → 350
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:29 → 393
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10N20.1 GenPept UniProtKB/Swiss-Prot:Q10N20

    Gene LinkOut

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    Research Materials