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    LOC4344482 phospholipase SGR2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344482, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344482
    Gene description
    phospholipase SGR2
    Locus tag
    OSNPB_080110700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 17.3), milk grains (RPKM 7.6) and 6 other tissues See more
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    Genomic context

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    See LOC4344482 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (566347..576658, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (561000..571330, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 4 Neighboring gene uncharacterized LOC4344481 Neighboring gene uncharacterized LOC9266838 Neighboring gene uncharacterized LOC4344485

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase SGR2
    Names
    Os08g0110700
    P0007D08.37
    putative shoot gravitropism 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      566347..576658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027609.2 → XP_025883394.1  phospholipase SGR2 isoform X2

      UniProtKB/TrEMBL
      B8BA52
      Conserved Domains (1) summary
      pfam02862
      Location:658 → 852
      DDHD; DDHD domain

    2. XM_015795342.3 → XP_015650828.1  phospholipase SGR2 isoform X1

      UniProtKB/TrEMBL
      B8BA52, B9FYQ3, Q0J8H9, Q6ZC54
      Conserved Domains (1) summary
      pfam02862
      Location:680 → 874
      DDHD; DDHD domain

    3. XM_015795343.3 → XP_015650829.1  phospholipase SGR2 isoform X1

      UniProtKB/TrEMBL
      B8BA52, B9FYQ3, Q0J8H9, Q6ZC54
      Conserved Domains (1) summary
      pfam02862
      Location:680 → 874
      DDHD; DDHD domain
    Nucleotide Protein
    Heading Accession and Version

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