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    LOC4344705 NAC domain-containing protein 14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344705, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344705
    Gene description
    NAC domain-containing protein 14
    Locus tag
    OSNPB_080157900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 174.2), leaves before flowering (RPKM 62.4) and 6 other tissues See more
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    Genomic context

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    See LOC4344705 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (3435799..3440122, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3389027..3393449, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative B3 domain-containing protein Os08g0157700 Neighboring gene uncharacterized LOC4344704 Neighboring gene berberine bridge enzyme-like D-2 Neighboring gene berberine bridge enzyme-like D-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 14
    Names
    NAC2 protein
    NAC2 protein-like
    Os08g0157900
    P0498E12.103

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      3435799..3440122 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794803.3 → XP_015650289.1  NAC domain-containing protein 14 isoform X2

      UniProtKB/TrEMBL
      B8BAW7, B9FZ60, Q0J7W7, Q7EZD3
      Conserved Domains (1) summary
      pfam02365
      Location:10 → 141
      NAM; No apical meristem (NAM) protein

    2. XM_015794802.3 → XP_015650288.1  NAC domain-containing protein 14 isoform X1

      UniProtKB/TrEMBL
      B8BAW7
      Conserved Domains (1) summary
      pfam02365
      Location:10 → 141
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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