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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032008.1 RefSeqGene
- Range
-
5001..57016
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_373
mRNA and Protein(s)
-
NM_001005373.4 → NP_001005373.1 E3 ubiquitin-protein ligase LRSAM1 isoform 1
See identical proteins and their annotated locations for NP_001005373.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same isoform (1).
- Source sequence(s)
-
AL445222
- Consensus CDS
-
CCDS6873.1
- UniProtKB/Swiss-Prot
- Q5VVV0, Q6UWE0, Q8NB40, Q96GT5, Q96MX5, Q96MZ7
- UniProtKB/TrEMBL
-
A0A6Q8PGF7
- Related
- ENSP00000300417.6, ENST00000300417.11
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:65 → 181
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:674 → 713
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:257 → 474
- DUF5401; Family of unknown function (DUF5401)
-
NM_001005374.4 → NP_001005374.1 E3 ubiquitin-protein ligase LRSAM1 isoform 1
See identical proteins and their annotated locations for NP_001005374.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same isoform (1).
- Source sequence(s)
-
AY358830, BC009239
- Consensus CDS
-
CCDS6873.1
- UniProtKB/Swiss-Prot
- Q5VVV0, Q6UWE0, Q8NB40, Q96GT5, Q96MX5, Q96MZ7
- UniProtKB/TrEMBL
-
A0A6Q8PGF7
- Related
- ENSP00000362419.1, ENST00000373322.1
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:65 → 181
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:674 → 713
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:257 → 474
- DUF5401; Family of unknown function (DUF5401)
-
NM_001190723.3 → NP_001177652.1 E3 ubiquitin-protein ligase LRSAM1 isoform 2
See identical proteins and their annotated locations for NP_001177652.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AK056203, BC009239, DA165729
- Consensus CDS
-
CCDS55347.1
- UniProtKB/TrEMBL
-
A0A6Q8PFT9
- Related
- ENSP00000362421.4, ENST00000373324.8
- Conserved Domains (8) summary
-
- cd09523
Location:540 → 604
- SAM_TAL; SAM domain of TAL subfamily
- smart00454
Location:544 → 604
- SAM; Sterile alpha motif
- cd00116
Location:67 → 162
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- pfam10267
Location:308 → 416
- Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein
- pfam12799
Location:127 → 166
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:127 → 181
- LRR_8; Leucine rich repeat
- pfam13920
Location:647 → 689
- zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
-
NM_001384142.1 → NP_001371071.1 E3 ubiquitin-protein ligase LRSAM1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL445222
- Consensus CDS
-
CCDS6873.1
- UniProtKB/Swiss-Prot
- Q5VVV0, Q6UWE0, Q8NB40, Q96GT5, Q96MX5, Q96MZ7
- UniProtKB/TrEMBL
-
A0A6Q8PGF7
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:65 → 181
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:674 → 713
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:257 → 474
- DUF5401; Family of unknown function (DUF5401)
-
NM_001384143.1 → NP_001371072.1 E3 ubiquitin-protein ligase LRSAM1 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AL445222
- Consensus CDS
-
CCDS94485.1
- UniProtKB/TrEMBL
- A0A6Q8PFT9, A0A6Q8PGW1
- Related
- ENSP00000501598.1, ENST00000675572.1
- Conserved Domains (5) summary
-
- cd09523
Location:536 → 598
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:65 → 181
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:641 → 680
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:257 → 474
- DUF5401; Family of unknown function (DUF5401)
-
NM_001384144.1 → NP_001371073.1 E3 ubiquitin-protein ligase LRSAM1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AL445222
- Conserved Domains (4) summary
-
- PRK12704
Location:27 → 113
- PRK12704; phosphodiesterase; Provisional
- cd16515
Location:411 → 450
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:3 → 211
- DUF5401; Family of unknown function (DUF5401)
- cl15755
Location:304 → 368
- SAM_superfamily; SAM (Sterile alpha motif )
-
NM_138361.5 → NP_612370.3 E3 ubiquitin-protein ligase LRSAM1 isoform 1
See identical proteins and their annotated locations for NP_612370.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Variants 1, 2 and 3 encode the same isoform (1).
- Source sequence(s)
-
AI364608, AK091589, BC009239, DA726792
- Consensus CDS
-
CCDS6873.1
- UniProtKB/Swiss-Prot
- Q5VVV0, Q6UWE0, Q8NB40, Q96GT5, Q96MX5, Q96MZ7
- UniProtKB/TrEMBL
-
A0A6Q8PGF7
- Related
- ENSP00000322937.4, ENST00000323301.8
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:65 → 181
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:674 → 713
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:257 → 474
- DUF5401; Family of unknown function (DUF5401)
RNA
-
NR_168891.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL445222
- Related
-
ENST00000498513.6
-
NR_168892.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL445222
- Related
-
ENST00000675641.1