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    SPATA45 spermatogenesis associated 45 [ Homo sapiens (human) ]

    Gene ID: 149643, updated on 17-Sep-2024

    Summary

    Official Symbol
    SPATA45provided by HGNC
    Official Full Name
    spermatogenesis associated 45provided by HGNC
    Primary source
    HGNC:HGNC:33709
    See related
    Ensembl:ENSG00000185523 AllianceGenome:HGNC:33709
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C1orf227
    Expression
    Biased expression in testis (RPKM 2.4), lymph node (RPKM 0.2) and 3 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See SPATA45 in Genome Data Viewer
    Location:
    1q32.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (212830141..212847649, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (212075115..212092629, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (213003483..213020991, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:212967459-212967959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2519 Neighboring gene TatD DNase domain containing 3 Neighboring gene RPS5 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:213025330-213025917 Neighboring gene FLVCR1 divergent transcript Neighboring gene ribosomal protein S28 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    spermatogenesis-associated protein 45
    Names
    UPF0732 protein C1orf227

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024601.3NP_001019772.1  spermatogenesis-associated protein 45

      See identical proteins and their annotated locations for NP_001019772.1

      Status: VALIDATED

      Source sequence(s)
      BC035742
      Consensus CDS
      CCDS31020.1
      UniProtKB/Swiss-Prot
      Q537H7
      Related
      ENSP00000419160.1, ENST00000332912.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      212830141..212847649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      212075115..212092629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)