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    MYB15 myb domain protein 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821904, updated on 18-Sep-2024

    Summary

    Official Symbol
    MYB15
    Official Full Name
    myb domain protein 15
    Primary source
    TAIR:AT3G23250
    Locus tag
    AT3G23250
    See related
    Araport:AT3G23250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB15; ATY19; myb domain protein 15; MYB DOMAIN PROTEIN 15
    Summary
    Member of the R2R3 factor gene family.
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    Genomic context

    See MYB15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (8309209..8310910)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ethylene response factor 1 Neighboring gene uncharacterized protein Neighboring gene tRNA dimethylallyltransferase Neighboring gene F-box and associated interaction domains-containing protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001035670.1
    NM_113226.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in response to cold IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    myb domain protein 15
    NP_001030747.1
    • myb domain protein 15 (MYB15); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 13 (TAIR:AT1G06180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_188966.1
    • myb domain protein 15 (MYB15); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 14 (TAIR:AT2G31180.1); Has 9082 Blast hits to 8389 proteins in 525 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 506; Plants - 5968; Viruses - 4; Other Eukaryotes - 1801 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8309209..8310910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113226.5NP_188966.1  myb domain protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188966.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49744, Q39260, Q9LTC4
      UniProtKB/TrEMBL
      A0A178V7L7, A0A5S9XEW2
      Conserved Domains (1) summary
      PLN03212
      Location:5191
      PLN03212; Transcription repressor MYB5; Provisional
    2. NM_001035670.1NP_001030747.1  myb domain protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030747.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J2X8
      Conserved Domains (2) summary
      smart00717
      Location:1057
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:1055
      Myb_DNA-binding; Myb-like DNA-binding domain