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    Topoisomerase II-associated protein PAT1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827158, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Topoisomerase II-associated protein PAT1
    Primary source
    TAIR:AT4G14990
    Locus tag
    AT4G14990
    See related
    Araport:AT4G14990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3535C; FCAALL.26
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (8565622..8569871, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fanconi anemia group D2 protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Ribosomal L27e protein family Neighboring gene Mitochondrial substrate carrier family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340986.1
    NM_117586.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Topoisomerase II-associated protein PAT1
    NP_567452.2
    • Topoisomerase II-associated protein PAT1; BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8565622..8569871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117586.4 → NP_567452.2  Topoisomerase II-associated protein PAT1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567452.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23352, Q0WLS5, Q94C98
      UniProtKB/TrEMBL
      A0A178V4F6

    2. NM_001340986.1 → NP_001328555.1  Topoisomerase II-associated protein PAT1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4F6, A0A1P8B4Z4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94C98.1

    Gene LinkOut

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