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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817933, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G33680
    Locus tag
    AT2G33680
    See related
    Araport:AT2G33680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1B8.1; T1B8_1
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (14248057..14251936)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene tRNA-Asp Neighboring gene tRNA-Asp Neighboring gene Seven transmembrane MLO family protein Neighboring gene uncharacterized protein Neighboring gene Late embryogenesis abundant protein, group 6 Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pentatricopeptide repeat protein GEND1 is required for root development and high temperature tolerance in Arabidopsis thaliana. Guo Z, et al. Biochem Biophys Res Commun, 2021 Nov 12. PMID 34536829
    2. Tissue organization of fasciated lateral roots of Arabidopsis mutants suggestive of the robust nature of outer layer patterning. Otsuka K, et al. J Plant Res, 2012 Jul. PMID 22258701
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lateral root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to temperature stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001318343.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 49646 Blast hits to 13771 proteins in 238 species: Archae - 0; Bacteria - 6; Metazoa - 50; Fungi - 74; Plants - 48928; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14248057..14251936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336462.1 → NP_001323755.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTD2, A0A1P8AY39, A0A384KS37, A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:91 → 780
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:555 → 582
      PPR; PPR repeat [structural motif]

    2. NM_001336461.1 → NP_001318343.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93005
      UniProtKB/TrEMBL
      A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:27 → 716
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:491 → 518
      PPR; PPR repeat [structural motif]

    3. NM_001336463.1 → NP_001323754.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTD2, A0A1P8AY39, A0A384KS37, A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:91 → 780
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:555 → 582
      PPR; PPR repeat [structural motif]

    4. NM_001336464.1 → NP_001323759.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTD2, A0A1P8AY39, A0A384KS37, A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:91 → 780
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:555 → 582
      PPR; PPR repeat [structural motif]

    5. NM_001336465.1 → NP_001323758.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY14, A0A5S9X3Q8, A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:102 → 791
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:566 → 593
      PPR; PPR repeat [structural motif]

    6. NM_001336466.1 → NP_001323757.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY27, A0A654EYI9

    7. NM_001336467.1 → NP_001323756.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93005
      UniProtKB/TrEMBL
      A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:27 → 716
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:491 → 518
      PPR; PPR repeat [structural motif]

    8. NM_128926.1 → NP_180924.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180924.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93005
      UniProtKB/TrEMBL
      A0A654EYI9
      Conserved Domains (2) summary
      PLN03077
      Location:27 → 716
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:491 → 518
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93005.1

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