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    LINC02012 long intergenic non-protein coding RNA 2012 [ Homo sapiens (human) ]

    Gene ID: 100129516, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02012provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2012provided by HGNC
    Primary source
    HGNC:HGNC:52847
    See related
    AllianceGenome:HGNC:52847
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC02012 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (197505262..197509661, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200237902..200242292, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (197232133..197236532, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374308 Neighboring gene NANOG hESC enhancer GRCh37_chr3:197144782-197145297 Neighboring gene MPRA-validated peak4993 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197189524-197189726 Neighboring gene uncharacterized LOC105374309 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:197205169-197206368 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:197216831-197217376 and GRCh37_chr3:197217377-197217922 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197229162-197229325 Neighboring gene Sharpr-MPRA regulatory region 5776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197238623-197239160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197247683-197248388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197248389-197249094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197250741-197251240 Neighboring gene 3-hydroxybutyrate dehydrogenase 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:197268447-197269042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197269043-197269636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21111 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:197303211-197303712 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197306909-197307455 Neighboring gene ribosomal protein L36 pseudogene 7

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_145451.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC128709

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      197505262..197509661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187534.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      49222..53621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      200237902..200242292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)