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    LOC101927089 uncharacterized LOC101927089 [ Homo sapiens (human) ]

    Gene ID: 101927089, updated on 27-Aug-2024

    Summary

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    Gene symbol
    LOC101927089
    Gene description
    uncharacterized LOC101927089
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.3) See more
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    Genomic context

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    Location:
    2p16.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (50620924..50632732)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (50617052..50628761)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:50163910-50164578 Neighboring gene ribosomal protein L7 pseudogene 13 Neighboring gene VISTA enhancer hs2343 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:50231574-50232307 Neighboring gene neurexin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:50311271-50311784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:50311785-50312297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:50572921-50573860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:50573861-50574798 Neighboring gene MPRA-validated peak3699 silencer Neighboring gene VISTA enhancer hs1348 Neighboring gene MT-CO1 pseudogene 42 Neighboring gene microRNA 8485 Neighboring gene uncharacterized LOC124906006

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      50620924..50632732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_245002.5 RNA Sequence

    2. XR_940083.2 RNA Sequence

    3. XR_245001.4 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      50617052..50628761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072062.1 RNA Sequence

    2. XR_007072063.1 RNA Sequence

    3. XR_007072061.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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