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    bath-38 BTB and MATH domain-containing protein 38 [ Caenorhabditis elegans ]

    Gene ID: 174567, updated on 2-Nov-2024

    Summary

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    Official Symbol
    bath-38
    Official Full Name
    BTB and MATH domain-containing protein 38
    Primary source
    WormBase:WBGene00009945
    Locus tag
    CELE_F52H3.3
    See related
    AllianceGenome:WB:WBGene00009945
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in several structures, including hypodermis and pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See bath-38 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (10042780..10045270, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Procollagen-lysine,2-oxoglutarate 5-dioxygenase Neighboring gene SPK domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene FMRF-Like Peptide Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene STarGazin (mammalian calcium channel) homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    BTB and MATH domain-containing protein 38
    NP_496172.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      10042780..10045270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063771.5 → NP_496172.1  BTB and MATH domain-containing protein 38 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496172.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q20681
      Conserved Domains (3) summary
      smart00225
      Location:229 → 322
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:228 → 322
      BTB; BTB/POZ domain
      cl02446
      Location:79 → 205
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q20681.1

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