U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam131a family with sequence similarity 131, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100360487, updated on 9-Nov-2024

    Summary

    Go to the top of the page Help
    Symbol
    Fam131aprovided by RGD
    Full Name
    family with sequence similarity 131, member Aprovided by RGD
    Primary source
    RGD:2322069
    See related
    EnsemblRapid:ENSRNOG00000063031 AllianceGenome:RGD:2322069
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM131A (family with sequence similarity 131 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 186.5), Heart (RPKM 69.6) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Fam131a in Genome Data Viewer
    Location:
    11q23
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (93715979..93725930, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (80211577..80221527, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (83897330..83907292, complement)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene thrombopoietin like 1 Neighboring gene RNA polymerase II, I and III subunit H Neighboring gene chloride voltage-gated channel 2 Neighboring gene eukaryotic translation initiation factor 4 gamma 1 Neighboring gene small nucleolar RNA, C/D box 66 Neighboring gene proteasome 26S subunit ubiquitin receptor, non-ATPase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM131A
    Names
    protein FAM131A-like
    rCG36585-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421442.1 → NP_001408371.1  protein FAM131A isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000011
      UniProtKB/TrEMBL
      A6JS88, D4ADK8
      Related
      ENSRNOP00000066988.4, ENSRNOT00000075606.4

    2. NM_001421443.1 → NP_001408372.1  protein FAM131A isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000011
      UniProtKB/TrEMBL
      A6JS87
      Related
      ENSRNOP00000065591.4, ENSRNOT00000073526.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      93715979..93725930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270225.1 → XP_063126295.1  protein FAM131A isoform X1

      UniProtKB/TrEMBL
      A6JS87

    2. XM_008768818.4 → XP_008767040.1  protein FAM131A isoform X2

      See identical proteins and their annotated locations for XP_008767040.1

      UniProtKB/TrEMBL
      A6JS88, D4ADK8
      Conserved Domains (1) summary
      pfam15010
      Location:1 → 271
      FAM131; Putative cell signalling

    3. XM_039088957.2 → XP_038944885.1  protein FAM131A isoform X2

      UniProtKB/TrEMBL
      A6JS88, D4ADK8
      Conserved Domains (1) summary
      pfam15010
      Location:1 → 271
      FAM131; Putative cell signalling

    4. XM_008768817.3 → XP_008767039.1  protein FAM131A isoform X2

      See identical proteins and their annotated locations for XP_008767039.1

      UniProtKB/TrEMBL
      A6JS88, D4ADK8
      Conserved Domains (1) summary
      pfam15010
      Location:1 → 271
      FAM131; Putative cell signalling

    5. XM_017598227.3 → XP_017453716.1  protein FAM131A isoform X2

      UniProtKB/TrEMBL
      A6JS88, D4ADK8
      Conserved Domains (1) summary
      pfam15010
      Location:1 → 271
      FAM131; Putative cell signalling

    6. XM_039088956.2 → XP_038944884.1  protein FAM131A isoform X3

      Conserved Domains (1) summary
      pfam15010
      Location:86 → 208
      FAM131; Putative cell signalling
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.