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    Msantd3 Myb/SANT DNA binding domain containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362516, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Msantd3provided by RGD
    Official Full Name
    Myb/SANT DNA binding domain containing 3provided by RGD
    Primary source
    RGD:1308165
    See related
    EnsemblRapid:ENSRNOG00000008159 AllianceGenome:RGD:1308165
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308165
    Summary
    Orthologous to human MSANTD3 (Myb/SANT DNA binding domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 48.7), Heart (RPKM 45.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Msantd3 in Genome Data Viewer
    Location:
    5q22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (67661551..67687971)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (62866022..62892444)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (64282351..64308606)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene inversin Neighboring gene uncharacterized LOC102551711 Neighboring gene testis expressed 10 Neighboring gene uncharacterized LOC108350968 Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1 Neighboring gene caveolae associated protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Enhanced serotonin response in the hippocampus of Galphaz protein knock-out mice. Oleskevich S, et al. Neuroreport, 2005 Jun 21. PMID 15931062
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    myb/SANT-like DNA-binding domain-containing protein 3
    Names
    Myb/SANT-like DNA-binding domain containing 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108664.1 → NP_001102134.1  myb/SANT-like DNA-binding domain-containing protein 3

      See identical proteins and their annotated locations for NP_001102134.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474056
      UniProtKB/TrEMBL
      A6KJF2, D4A3I3
      Conserved Domains (1) summary
      pfam13873
      Location:10 → 87
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      67661551..67687971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110242.2 → XP_038966170.1  myb/SANT-like DNA-binding domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A6KJF2, D4A3I3
      Conserved Domains (1) summary
      pfam13873
      Location:10 → 87
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    2. XM_039110241.2 → XP_038966169.1  myb/SANT-like DNA-binding domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A6KJF2, D4A3I3
      Related
      ENSRNOP00000011273.5, ENSRNOT00000011273.7
      Conserved Domains (1) summary
      pfam13873
      Location:10 → 87
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

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