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    Ccdc97 coiled-coil domain containing 97 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292724, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc97provided by RGD
    Official Full Name
    coiled-coil domain containing 97provided by RGD
    Primary source
    RGD:1309393
    See related
    EnsemblRapid:ENSRNOG00000020675 AllianceGenome:RGD:1309393
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309393
    Summary
    Orthologous to human CCDC97 (coiled-coil domain containing 97). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 56.5), Spleen (RPKM 56.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc97 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (90347003..90354809, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (81219225..81227017, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (82503571..82511327, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482996 Neighboring gene B9 domain containing 2 Neighboring gene transforming growth factor, beta 1 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 1 Neighboring gene Axl receptor tyrosine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 97

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106235.1 → NP_001099705.1  coiled-coil domain-containing protein 97

      See identical proteins and their annotated locations for NP_001099705.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473979
      UniProtKB/TrEMBL
      A6J987, D4A4L2
      Related
      ENSRNOP00000028065.4, ENSRNOT00000028065.7
      Conserved Domains (2) summary
      pfam09747
      Location:159 → 326
      DUF2052; Coiled-coil domain containing protein (DUF2052)
      cl00604
      Location:27 → 100
      STAS; Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      90347003..90354809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039104069.2 → XP_038959997.1  coiled-coil domain-containing protein 97 isoform X1

      Conserved Domains (1) summary
      pfam09747
      Location:18 → 175
      DUF2052; Coiled-coil domain containing protein (DUF2052)
    Nucleotide Protein Strain
    Heading Accession and Version

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