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    Fam118a family with sequence similarity 118, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300120, updated on 17-Aug-2024

    Summary

    Official Symbol
    Fam118aprovided by RGD
    Official Full Name
    family with sequence similarity 118, member Aprovided by RGD
    Primary source
    RGD:1560783
    See related
    EnsemblRapid:ENSRNOG00000013764 AllianceGenome:RGD:1560783
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560783
    Summary
    Predicted to enable identical protein binding activity. Orthologous to human FAM118A (family with sequence similarity 118 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 92.1), Brain (RPKM 29.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam118a in Genome Data Viewer
    Location:
    7q34
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (118032313..118058888)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (116152448..116178976)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (125937928..125964455)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479760 Neighboring gene uroplakin 3A Neighboring gene structural maintenance of chromosomes 1B Neighboring gene U6 spliceosomal RNA Neighboring gene RIB43A domain with coiled-coils 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173336.1NP_001166807.1  protein FAM118A

      See identical proteins and their annotated locations for NP_001166807.1

      Status: PROVISIONAL

      Source sequence(s)
      BC169018
      UniProtKB/TrEMBL
      B5DFD4
      Related
      ENSRNOP00000107006.1, ENSRNOT00000129572.1
      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      118032313..118058888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078847.2XP_038934775.1  protein FAM118A isoform X3

      UniProtKB/TrEMBL
      F7FDN4
      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    2. XM_063263325.1XP_063119395.1  protein FAM118A isoform X2

    3. XM_063263328.1XP_063119398.1  protein FAM118A isoform X4

      UniProtKB/TrEMBL
      A0A0G2K3T5
    4. XM_063263324.1XP_063119394.1  protein FAM118A isoform X1

    5. XM_006242157.5XP_006242219.1  protein FAM118A isoform X3

      See identical proteins and their annotated locations for XP_006242219.1

      UniProtKB/TrEMBL
      F7FDN4
      Related
      ENSRNOP00000045006.4, ENSRNOT00000044274.6
      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    6. XM_063263323.1XP_063119393.1  protein FAM118A isoform X1

    7. XM_063263326.1XP_063119396.1  protein FAM118A isoform X2

    8. XM_063263327.1XP_063119397.1  protein FAM118A isoform X2