U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Spin4 spindlin family, member 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299038, updated on 2-Nov-2024

    Summary

    Symbol
    Spin4provided by RGD
    Full Name
    spindlin family, member 4provided by RGD
    Primary source
    RGD:1564004
    See related
    EnsemblRapid:ENSRNOG00000077287 AllianceGenome:RGD:1564004
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564004; AABR07038930.1
    Summary
    Predicted to enable methylated histone binding activity. Predicted to be involved in negative regulation of cell population proliferation and positive regulation of canonical Wnt signaling pathway. Predicted to be located in chromatin; cytoplasm; and nucleus. Orthologous to human SPIN4 (spindlin family member 4). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Spin4 in Genome Data Viewer
    Location:
    Xq22
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (63898338..63902427, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (59888728..59892817, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (64217074..64221225, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene germ cell-less 1, spermatogenesis associated, pseudogene 1 Neighboring gene Cdc42 guanine nucleotide exchange factor 9 Neighboring gene uncharacterized LOC134484135 Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables methylated histone binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of canonical Wnt signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401117.1NP_001388046.1  spindlin-4

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I6ASA7
      Related
      ENSRNOP00000104082.1, ENSRNOT00000136053.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      63898338..63902427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)