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    Kctd18 potassium channel tetramerization domain containing 18 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301436, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Kctd18provided by RGD
    Official Full Name
    potassium channel tetramerization domain containing 18provided by RGD
    Primary source
    RGD:1564820
    See related
    EnsemblRapid:ENSRNOG00000027091 AllianceGenome:RGD:1564820
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564820
    Summary
    Predicted to be involved in protein homooligomerization. Orthologous to human KCTD18 (potassium channel tetramerization domain containing 18). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 93.1), Spleen (RPKM 64.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kctd18 in Genome Data Viewer
    Location:
    9q31
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (66996440..67061069, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (59502220..59566857, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (64849547..64916652, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094689 Neighboring gene spermatogenesis associated, serine-rich 2-like Neighboring gene 60S ribosomal protein L30-like Neighboring gene U6 spliceosomal RNA Neighboring gene shugoshin 2 Neighboring gene aldehyde oxidase 1 Neighboring gene uncharacterized LOC120094690 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene aldehyde oxidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein KCTD18
    Names
    potassium channel tetramerisation domain containing 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428736.1 → NP_001415665.1  BTB/POZ domain-containing protein KCTD18 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6IP46, D4A827

    2. NM_001428737.1 → NP_001415666.1  BTB/POZ domain-containing protein KCTD18 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6IP46, D4A827

    3. NM_001428738.1 → NP_001415667.1  BTB/POZ domain-containing protein KCTD18 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6IP46, D4A827

    4. NM_001428739.1 → NP_001415668.1  BTB/POZ domain-containing protein KCTD18 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6IP46, D4A827

    5. NM_001428740.1 → NP_001415669.1  BTB/POZ domain-containing protein KCTD18 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      66996440..67061069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266949.1 → XP_063123019.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      UniProtKB/TrEMBL
      A6IP46, D4A827

    2. XM_008767087.4 → XP_008765309.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      See identical proteins and their annotated locations for XP_008765309.1

      UniProtKB/TrEMBL
      A6IP46, D4A827
      Conserved Domains (1) summary
      cd18372
      Location:11 → 111
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    3. XM_063266948.1 → XP_063123018.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      UniProtKB/TrEMBL
      A6IP46, D4A827

    4. XM_008767086.4 → XP_008765308.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      Conserved Domains (1) summary
      cd18372
      Location:11 → 111
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    5. XM_039083313.2 → XP_038939241.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      Conserved Domains (1) summary
      cd18372
      Location:11 → 111
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    6. XM_063266950.1 → XP_063123020.1  BTB/POZ domain-containing protein KCTD18 isoform X3

    7. XM_017596364.3 → XP_017451853.1  BTB/POZ domain-containing protein KCTD18 isoform X3

    8. XM_039083315.2 → XP_038939243.1  BTB/POZ domain-containing protein KCTD18 isoform X2

    9. XM_006244967.4 → XP_006245029.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      Conserved Domains (1) summary
      cd18372
      Location:11 → 111
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    10. XM_039083314.2 → XP_038939242.1  BTB/POZ domain-containing protein KCTD18 isoform X1

      Conserved Domains (1) summary
      cd18372
      Location:11 → 111
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)
    Nucleotide Protein Strain
    Heading Accession and Version

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