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    vap-1 SCP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181768, updated on 2-Nov-2024

    Summary

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    Official Symbol
    vap-1
    Official Full Name
    SCP domain-containing protein
    Primary source
    WormBase:WBGene00006886
    Locus tag
    CELE_F11C7.3
    See related
    AllianceGenome:WB:WBGene00006886
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in extracellular space. Is expressed in amphid sheath cell. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See vap-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (17393939..17396556, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase NEURL1B;NHR domain-containing protein;Neuralized-like protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ShKT domain-containing protein Neighboring gene Venom protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances. Mohandas N, et al. Biotechnol Adv, 2015 Dec. PMID 26239368
    2. CAP protein superfamily members in Toxocara canis. Stroehlein AJ, et al. Parasit Vectors, 2016 Jun 24. PMID 27342979, Free PMC Article
    3. Molecular pathways that influence human tau-induced pathology in Caenorhabditis elegans. Kraemer BC, et al. Hum Mol Genet, 2006 May 1. PMID 16600994
    4. Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes. Suriyalaksh M, et al. iScience, 2022 Jan 21. PMID 35036864, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SCP domain-containing protein
    NP_001024553.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      17393939..17396556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029382.3 → NP_001024553.1  SCP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024553.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19348, Q8MQ79
      Conserved Domains (1) summary
      smart00198
      Location:234 → 386
      SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains
    Nucleotide Protein
    Heading Accession and Version

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