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    F15B9.10 TPM domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 6418727, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F15B9.10
    Official Full Name
    TPM domain-containing protein
    Primary source
    WormBase:WBGene00045418
    Locus tag
    CELE_F15B9.10
    See related
    AllianceGenome:WB:WBGene00045418
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of acetylcholine-gated channel complex. Predicted to be active in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F15B9.10 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (13006970..13008925, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF148 domain-containing protein Neighboring gene FH2 domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Ala Neighboring gene Peptidase S1 domain-containing protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of acetylcholine-gated channel complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TPM domain-containing protein
    NP_001256473.1
    • Confirmed by transcript evidence
    NP_001256474.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13006970..13008925 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269545.2 → NP_001256474.1  TPM domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256474.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5Z2T9
      Conserved Domains (1) summary
      pfam04536
      Location:51 → 174
      TPM; TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase

    2. NM_001269544.3 → NP_001256473.1  TPM domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256473.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      I2HA81
      Conserved Domains (1) summary
      pfam04536
      Location:51 → 174
      TPM; TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase
    Nucleotide Protein
    Heading Accession and Version

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