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    tag-343 RNA polymerase II-associated factor 1 homolog [ Caenorhabditis elegans ]

    Gene ID: 181722, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tag-343
    Official Full Name
    RNA polymerase II-associated factor 1 homolog
    Primary source
    WormBase:WBGene00018374
    Locus tag
    CELE_F43B10.2
    See related
    AllianceGenome:WB:WBGene00018374
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in transcription elongation by RNA polymerase II. Predicted to be located in membrane and nucleus. Predicted to be part of Cdc73/Paf1 complex. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See tag-343 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    21
    Sequence:
    Chromosome: X; NC_003284.9 (16665093..16674732, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene EF-hand domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Spore coat protein Neighboring gene VrrB protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TORC1 phosphoproteome in C. elegans reveals roles in transcription and autophagy. Sewell AK, et al. iScience, 2022 May 20. PMID 35479415, Free PMC Article
    2. Shifted Transversal Design smart-pooling for high coverage interactome mapping. Xin X, et al. Genome Res, 2009 Jul. PMID 19447967, Free PMC Article
    3. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
    4. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    5. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Cdc73/Paf1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II-associated factor 1 homolog
    NP_001041251.1
    • Confirmed by transcript evidence
    NP_001041252.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      16665093..16674732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047786.4 → NP_001041251.1  RNA polymerase II-associated factor 1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041251.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9TZM9

    2. NM_001047787.4 → NP_001041252.1  RNA polymerase II-associated factor 1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041252.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1XFY2
    Nucleotide Protein
    Heading Accession and Version

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