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    mrpl-38 Large ribosomal subunit protein mL38 [ Caenorhabditis elegans ]

    Gene ID: 171682, updated on 2-Nov-2024

    Summary

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    Official Symbol
    mrpl-38
    Official Full Name
    Large ribosomal subunit protein mL38
    Primary source
    WormBase:WBGene00021327
    Locus tag
    CELE_Y34D9A.1
    See related
    AllianceGenome:WB:WBGene00021327
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in several structures, including coelomocyte; nervous system; pharynx; rectal epithelium; and tail. Orthologous to human MRPL38 (mitochondrial ribosomal protein L38). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See mrpl-38 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (1019827..1029910, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Saposin B-type domain-containing protein Neighboring gene Saposin B-type domain-containing protein Neighboring gene Protein regulator of cytokinesis 1 Neighboring gene MIF4G domain-containing protein;THO complex subunit 2;TPR_REGION domain-containing protein;Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    2. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Large ribosomal subunit protein mL38
    NP_490808.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      1019827..1029910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058407.7 → NP_490808.1  Large ribosomal subunit protein mL38 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490808.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BL86
      Conserved Domains (1) summary
      cd00866
      Location:156 → 301
      PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes
    Nucleotide Protein
    Heading Accession and Version

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