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    C30F12.2 ATPase N2B [ Caenorhabditis elegans ]

    Gene ID: 172427, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C30F12.2
    Official Full Name
    ATPase N2B
    Primary source
    WormBase:WBGene00016261
    Locus tag
    CELE_C30F12.2
    See related
    AllianceGenome:WB:WBGene00016261
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATP hydrolysis activity. Predicted to be active in mitochondrion. Is expressed in several structures, including anal depressor muscle; hypodermis; intestine; nervous system; and reproductive system. Orthologous to human AFG1L (AFG1 like ATPase). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See C30F12.2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    9
    Sequence:
    Chromosome: I; NC_003279.8 (6967670..6970145, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Putative pterin-4-alpha-carbinolamine dehydratase Neighboring gene BACK domain-containing protein Neighboring gene Endoribonuclease rege-1 Neighboring gene Conserved plasma membrane protein Neighboring gene LITAF domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ATPase N2B
    NP_491986.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6967670..6970145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059585.6 → NP_491986.1  ATPase N2B [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491986.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95YE1
      Conserved Domains (2) summary
      COG1485
      Location:19 → 432
      YhcM; Predicted ATPase [General function prediction only]
      cl21455
      Location:19 → 437
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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