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    T22H9.1 [ Caenorhabditis elegans ]

    Gene ID: 24104925, updated on 22-Aug-2024

    Summary

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    Official Symbol
    T22H9.1
    Primary source
    WormBase:WBGene00020705
    Locus tag
    CELE_T22H9.1
    See related
    AllianceGenome:WB:WBGene00020705
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in intestine. Orthologous to human RRP36 (ribosomal RNA processing 36). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (359766..363685)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene PAZ domain-containing protein Neighboring gene Autophagy-related protein 9 Neighboring gene MLt-TeN (mlt-10) related Neighboring gene MLt-TeN (mlt-10) related Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of 90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    rRNA biogenesis protein RRP36
    NP_001294723.1
    • Confirmed by transcript evidence
    NP_001300206.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      359766..363685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001307794.3 → NP_001294723.1  rRNA biogenesis protein RRP36 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294723.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MNX1
      Conserved Domains (1) summary
      pfam06102
      Location:279 → 439
      DUF947; Domain of unknown function (DUF947)

    2. NM_001313277.3 → NP_001300206.1  rRNA biogenesis protein RRP36 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AV58
      Conserved Domains (1) summary
      pfam06102
      Location:191 → 351
      DUF947; Domain of unknown function (DUF947)
    Nucleotide Protein
    Heading Accession and Version

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