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    C56C10.7 putative trafficking protein particle complex subunit 13 homolog [ Caenorhabditis elegans ]

    Gene ID: 174089, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C56C10.7
    Official Full Name
    putative trafficking protein particle complex subunit 13 homolog
    Primary source
    WormBase:WBGene00016964
    Locus tag
    CELE_C56C10.7
    See related
    AllianceGenome:WB:WBGene00016964
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of TRAPPIII protein complex. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See C56C10.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    11
    Sequence:
    Chromosome: II; NC_003280.10 (6584410..6587575, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine receptor class alpha-31 Neighboring gene Protein kinase domain-containing protein Neighboring gene protein of unknown function DB domain-containing protein Neighboring gene Transcription factor BTF3 homolog Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. Davy A, et al. EMBO Rep, 2001 Sep. PMID 11559592, Free PMC Article
    2. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of TRAPPIII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative trafficking protein particle complex subunit 13 homolog
    NP_001348647.1
    • Confirmed by transcript evidence
    NP_001379835.1
    • Confirmed by transcript evidence
    NP_741009.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6584410..6587575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001361861.3 → NP_001348647.1  putative trafficking protein particle complex subunit 13 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      pfam06159
      Location:67 → 285
      DUF974; Protein of unknown function (DUF974)

    2. NM_171009.8 → NP_741009.1  putative trafficking protein particle complex subunit 13 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741009.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B2MZA6, Q95QQ2, Q95QQ3
      Conserved Domains (1) summary
      pfam06159
      Location:67 → 287
      DUF974; Protein of unknown function (DUF974)

    3. NM_001393102.1 → NP_001379835.1  putative trafficking protein particle complex subunit 13 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      pfam06159
      Location:1 → 130
      DUF974; Protein of unknown function (DUF974)

    RNA

    1. NR_155256.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95QQ2.1

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