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    urb-1 Nucleolar pre-ribosomal-associated protein 1 C-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179023, updated on 2-Nov-2024

    Summary

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    Official Symbol
    urb-1
    Official Full Name
    Nucleolar pre-ribosomal-associated protein 1 C-terminal domain-containing protein
    Primary source
    WormBase:WBGene00020273
    Locus tag
    CELE_T05H4.10
    See related
    AllianceGenome:WB:WBGene00020273
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human URB1 (URB1 ribosome biogenesis homolog). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See urb-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (6417495..6424155, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Glycoside hydrolase family 19 catalytic domain-containing protein Neighboring gene pseudo Neighboring gene tRNA Neighboring gene tRNA Neighboring gene DUF4706 domain-containing protein Neighboring gene ATP synthase-coupling factor 6, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Nucleolar pre-ribosomal-associated protein 1 C-terminal domain-containing protein
    NP_504629.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6417495..6424155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072228.6 → NP_504629.1  Nucleolar pre-ribosomal-associated protein 1 C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504629.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16515
      Conserved Domains (1) summary
      pfam16201
      Location:195 → 374
      NopRA1; Nucleolar pre-ribosomal-associated protein 1
    Nucleotide Protein
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