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    let-630 Small ribosomal subunit protein mS39 [ Caenorhabditis elegans ]

    Gene ID: 172153, updated on 2-Nov-2024

    Summary

    Official Symbol
    let-630
    Official Full Name
    Small ribosomal subunit protein mS39
    Primary source
    WormBase:WBGene00002804
    Locus tag
    CELE_Y110A7A.19
    See related
    AllianceGenome:WB:WBGene00002804
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable rRNA binding activity and ribosomal small subunit binding activity. Predicted to be involved in mitochondrial translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 51. Orthologous to human PTCD3 (pentatricopeptide repeat domain 3). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See let-630 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (5162602..5164884, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MATH domain-containing protein Neighboring gene Piwi domain-containing protein Neighboring gene Condensin-2 complex subunit hcp-6 Neighboring gene Spindle-defective protein 5 Neighboring gene Nuclear Pore complex Protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ribosomal small subunit binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ribosomal small subunit binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Small ribosomal subunit protein mS39
    NP_491536.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5162602..5164884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059135.7NP_491536.2  Small ribosomal subunit protein mS39 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N584
      Conserved Domains (2) summary
      sd00004
      Location:214244
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:267332
      PPR_3; Pentatricopeptide repeat domain