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    F21D5.4 HTH CENPB-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 184768, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F21D5.4
    Official Full Name
    HTH CENPB-type domain-containing protein
    Primary source
    WormBase:WBGene00009009
    Locus tag
    CELE_F21D5.4
    See related
    AllianceGenome:WB:WBGene00009009
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable sequence-specific DNA binding activity. Orthologous to human POGK (pogo transposable element derived with KRAB domain). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F21D5.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (8738087..8739101)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene OTU domain-containing protein Neighboring gene Multicopper oxidase;Plastocyanin-like domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Small ribosomal subunit protein mS33 Neighboring gene Ribonuclease H2 subunit B wHTH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    HTH CENPB-type domain-containing protein
    NP_501504.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8738087..8739101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069103.4 → NP_501504.1  HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501504.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19682
      Conserved Domains (2) summary
      smart00674
      Location:84 → 143
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      pfam09607
      Location:21 → 65
      BrkDBD; Brinker DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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