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    clec-54 CUB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 184217, updated on 28-Oct-2024

    Summary

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    Official Symbol
    clec-54
    Official Full Name
    CUB domain-containing protein
    Primary source
    WormBase:WBGene00008596
    Locus tag
    CELE_F08H9.8
    See related
    AllianceGenome:WB:WBGene00008596
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See clec-54 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (14476903..14479003)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C-type LECtin Neighboring gene C-type LECtin Neighboring gene C-type LECtin Neighboring gene Uncharacterized protein Neighboring gene Protein ORF59

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
    2. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
    3. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    CUB domain-containing protein
    NP_506590.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      14476903..14479003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074189.7 → NP_506590.2  CUB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506590.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19226
      Conserved Domains (3) summary
      smart00034
      Location:26 → 148
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00042
      Location:280 → 378
      CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
      cd00041
      Location:162 → 266
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    Nucleotide Protein
    Heading Accession and Version

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