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    npax-1 Paired domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 184779, updated on 2-Nov-2024

    Summary

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    Official Symbol
    npax-1
    Official Full Name
    Paired domain-containing protein
    Primary source
    WormBase:WBGene00017664
    Locus tag
    CELE_F21D12.5
    See related
    AllianceGenome:WB:WBGene00017664
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in head neurons. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See npax-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (7328736..7331324, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Amino acid transporter transmembrane domain-containing protein Neighboring gene NR LBD domain-containing protein Neighboring gene Endoplasmic reticulum chaperone BiP homolog;Heat shock 70 kDa protein D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pax genes in Caenorhabditis elegans: a new twist. Hobert O, et al. Trends Genet, 1999 Jun. PMID 10354580
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intracellular organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Paired domain-containing protein
    NP_495533.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7328736..7331324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063132.3 → NP_495533.2  Paired domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495533.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19677
      Conserved Domains (1) summary
      cl21459
      Location:60 → 122
      HTH; Helix-turn-helix domains
    Nucleotide Protein
    Heading Accession and Version

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