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    col-39 Cuticle collagen 39 [ Caenorhabditis elegans ]

    Gene ID: 174651, updated on 2-Nov-2024

    Summary

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    Official Symbol
    col-39
    Official Full Name
    Cuticle collagen 39
    Primary source
    WormBase:WBGene00000616
    Locus tag
    CELE_C09G5.4
    See related
    AllianceGenome:WB:WBGene00000616
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See col-39 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003280.10 (10704916..10706019)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Glycine receptor subunit beta-type 4 Neighboring gene 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 Neighboring gene Putative cuticle collagen 79 Neighboring gene Putative cuticle collagen 80 Neighboring gene Cuticle collagen bli-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Age-related behaviors have distinct transcriptional profiles in Caenorhabditis elegans. Golden TR, et al. Aging Cell, 2008 Dec. PMID 18778409, Free PMC Article
    2. Structures and functions of collagens in Caenorhabditis elegans. Kramer JM. FASEB J, 1994 Mar 1. PMID 8143939
    3. Analysis of RING finger genes required for embryogenesis in C. elegans. Moore R, et al. Genesis, 2004 Jan. PMID 14755799
    4. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen 39
    NP_496309.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      10704916..10706019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063908.7 → NP_496309.1  Cuticle collagen 39 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496309.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09455
      Conserved Domains (2) summary
      pfam01391
      Location:170 → 219
      Collagen; Collagen triple helix repeat (20 copies)
      smart01088
      Location:5 → 57
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q09455.1

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