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    snu-13 Small nuclear ribonucleoprotein associated homolog 13 [ Caenorhabditis elegans ]

    Gene ID: 174645, updated on 2-Nov-2024

    Summary

    Official Symbol
    snu-13
    Official Full Name
    Small nuclear ribonucleoprotein associated homolog 13
    Primary source
    WormBase:WBGene00010896
    Locus tag
    CELE_M28.5
    See related
    AllianceGenome:WB:WBGene00010896
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to be located in nucleus. Predicted to be part of box C/D methylation guide snoRNP complex; nucleus; and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See snu-13 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003280.10 (10658027..10658626, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Nephrocystin-1-like protein Neighboring gene Beta-lactamase-related domain-containing protein Neighboring gene ncRNA Neighboring gene putative splicing factor, arginine/serine-rich 7 Neighboring gene RING-CH-type domain-containing protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in maturation of SSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of box C/D methylation guide snoRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of precatalytic spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Small nuclear ribonucleoprotein associated homolog 13
    NP_001379076.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      10658027..10658626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001393180.1NP_001379076.1  Small nuclear ribonucleoprotein associated homolog 13 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q21568
      Conserved Domains (1) summary
      cd21104
      Location:7128
      SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13