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    sto-1 Band 7 domain-containing protein;Stomatin-1 [ Caenorhabditis elegans ]

    Gene ID: 181017, updated on 2-Nov-2024

    Summary

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    Official Symbol
    sto-1
    Official Full Name
    Band 7 domain-containing protein;Stomatin-1
    Primary source
    WormBase:WBGene00006063
    Locus tag
    CELE_F08C6.4
    See related
    AllianceGenome:WB:WBGene00006063
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system and pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See sto-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Sequence:
    Chromosome: X; NC_003284.9 (7562824..7564814)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Cation efflux protein cytoplasmic domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Vacuolar protein sorting-associated protein 52 homolog Neighboring gene Apyrase apy-1 Neighboring gene Zinc finger protein unc-98 Neighboring gene Putative choline-phosphate cytidylyltransferase;choline-phosphate cytidylyltransferase Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional genomics of the cilium, a sensory organelle. Blacque OE, et al. Curr Biol, 2005 May 24. PMID 15916950
    2. The relationship between intraflagellar transport and upstream protein trafficking pathways and macrocyclic lactone resistance in Caenorhabditis elegans. Brinzer RA, et al. G3 (Bethesda), 2024 Mar 6. PMID 38227795, Free PMC Article
    3. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    4. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    5. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Band 7 domain-containing protein;Stomatin-1
    NP_001123124.1
    • Confirmed by transcript evidence
    NP_509281.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      7562824..7564814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_076880.8 → NP_509281.1  Stomatin-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509281.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19200
      Conserved Domains (2) summary
      smart00244
      Location:62 → 220
      PHB; prohibitin homologues
      cl19107
      Location:86 → 283
      SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    2. NM_001129652.6 → NP_001123124.1  Band 7 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G8JY63
      Conserved Domains (1) summary
      cl19107
      Location:86 → 283
      SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q19200.2

    Gene LinkOut

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