nhr-97 Nuclear hormone receptor family member nhr-97 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: nhr-97
Official Full Name: Nuclear hormone receptor family member nhr-97
Primary source: WormBase:WBGene00003687
Locus tag: CELE_H27C11.1
See related: AllianceGenome:WB:WBGene00003687
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-97 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 9

Sequence:: Chromosome: IV; NC_003282.8 (9757648..9764497)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

H27C11.1 (e-PCR)
- UniSTS:313216

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Nuclear hormone receptor family member nhr-97

NP_001040954.1

Confirmed by transcript evidence

NP_001379453.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

9757648..9764497

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001047489.5 → NP_001040954.1 Nuclear hormone receptor family member nhr-97 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001040954.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q2YS47, Q9BJK5, Q9XXL0

Conserved Domains (2) summary

cd06960
Location:35 → 110

NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

smart00430
Location:213 → 375

HOLI; Ligand binding domain of hormone receptors
NM_001392373.1 → NP_001379453.1 Nuclear hormone receptor family member nhr-97 [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (1) summary

smart00430
Location:113 → 275

HOLI; Ligand binding domain of hormone receptors