U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GOLGA2P10 GOLGA2 pseudogene 10 [ Homo sapiens (human) ]

    Gene ID: 80154, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    GOLGA2P10provided by HGNC
    Official Full Name
    GOLGA2 pseudogene 10provided by HGNC
    Primary source
    HGNC:HGNC:26229
    See related
    AllianceGenome:HGNC:26229
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in prostate (RPKM 27.2), stomach (RPKM 24.8) and 22 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GOLGA2P10 in Genome Data Viewer
    Location:
    15q25.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82471477..82513999, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80335605..80378148, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (83140199..83182977, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene UBE2Q2 pseudogene 6 Neighboring gene hESC enhancers GRCh37_chr15:82988342-82989330 and GRCh37_chr15:83127113-83127972 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:83137289-83137789 Neighboring gene uncharacterized LOC105370926 Neighboring gene golgin A6 family like 17, pseudogene Neighboring gene dynamin 1 pseudogene 38

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. mRNA expression of AgSK1, an adenocarconoma-associated antigen, in tumor tissue of patients with colorectal cancer: Quantitative RT-PCR analysis. Yokoyama K, et al. Hum Antibodies, 2003. PMID 15156102
    2. Identification of the immunoreactive peptide sequence for AgSK1, an adenocarcinoma-restricted antigen. Yasutomi J, et al. Tissue Antigens, 2000 Feb. PMID 10746788
    3. AgSK1, a novel carcinoma associated antigen. Chang HR, et al. Cancer Res, 1993 Mar 1. PMID 8439957
    4. Systematic identification of pathological lamin A interactors. Dittmer TA, et al. Mol Biol Cell, 2014 May. PMID 24623722, Free PMC Article
    5. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Other Names

    • antigen SK1, colon cancer-associated
    • golgin A2 pseudogene 10
    • golgin subfamily A member 2-like

    Clone Names

    • FLJ17811, FLJ18166, FLJ22795, FLJ90297, FLJ99461, FLJ99773

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026811.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) includes an additional internal exon in the 5' region, and uses an alternate splice site in the 3' terminal exon, compared to variant 2.
      Source sequence(s)
      BC065260, BM981202, BQ232584, DB070142

    2. NR_033936.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longest transcript.
      Source sequence(s)
      AC245033, AK309732, BC065260, BM981202, BQ232584, DB070142

    3. NR_103496.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses alternate splice sites in both the 5' and 3' terminal exons, compared to variant 2.
      Source sequence(s)
      AK310769, BC065260, BM981202, BQ232584, DB070142

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      82471477..82513999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      260554..303332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      80335605..80378148 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_025084.1: Suppressed sequence

      Description
      NM_025084.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous