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    LOC147004 uncharacterized LOC147004 [ Homo sapiens (human) ]

    Gene ID: 147004, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC147004
    Gene description
    uncharacterized LOC147004
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC147004 in Genome Data Viewer
    Location:
    17q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (33559007..33582006)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (34505068..34528065)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene acid sensing ion channel subunit 2 Neighboring gene uncharacterized LOC112268206 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:31909946-31911145 Neighboring gene uncharacterized LOC100506677 Neighboring gene uncharacterized LOC124903984 Neighboring gene MPRA-validated peak2804 silencer Neighboring gene VISTA enhancer hs1725 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:32215069-32216268 Neighboring gene OCT4 hESC enhancer GRCh37_chr17:32223186-32223687 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:32256031-32256532 Neighboring gene uncharacterized LOC124903983 Neighboring gene Sharpr-MPRA regulatory region 12358

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • DKFZp686C0929

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      33559007..33582006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001752838.2 RNA Sequence

    2. XR_001752839.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      34505068..34528065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007087380.1 RNA Sequence

    2. XR_007087381.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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