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    Slc16a13 solute carrier family 16, member 13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287451, updated on 14-Nov-2024

    Summary

    Symbol
    Slc16a13provided by RGD
    Full Name
    solute carrier family 16, member 13provided by RGD
    Primary source
    RGD:1359138
    See related
    AllianceGenome:RGD:1359138
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in carboxylic acid transmembrane transport. Predicted to be located in Golgi apparatus and cytosol. Predicted to be active in plasma membrane. Orthologous to human SLC16A13 (solute carrier family 16 member 13). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 160.6), Adrenal (RPKM 37.1) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Slc16a13 in Genome Data Viewer
    Location:
    10q24
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (55424633..55436555, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (54925973..54937860, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (56827591..56831324, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene asialoglycoprotein receptor 2 Neighboring gene C-type lectin domain containing 10A Neighboring gene solute carrier family 16, member 11 Neighboring gene uncharacterized LOC120095129 Neighboring gene BCL6B, transcription repressor Neighboring gene microRNA 497

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables monocarboxylic acid transmembrane transporter activity  
    enables symporter activity  
    enables transmembrane transporter activity  
    Process Evidence Code Pubs
    involved_in monocarboxylic acid transport  
    involved_in transmembrane transport  
    Component Evidence Code Pubs
    located_in Golgi apparatus  
    located_in Golgi apparatus  
    located_in Golgi membrane  
    located_in cytosol  
    located_in cytosol  
    is_active_in plasma membrane  
    located_in plasma membrane  

    General protein information

    Preferred Names
    monocarboxylate transporter 13
    Names
    MCT 13
    solute carrier family 16 (monocarboxylic acid transporters), member 13
    solute carrier family 16, member 13 (monocarboxylic acid transporter 13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005530.1NP_001005530.1  monocarboxylate transporter 13

      See identical proteins and their annotated locations for NP_001005530.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081902
      UniProtKB/Swiss-Prot
      Q66HE2
      UniProtKB/TrEMBL
      A0A8I5ZP31, A6HG29
      Conserved Domains (1) summary
      cd17423
      Location:13392
      MFS_MCT11_13; Monocarboxylate transporters 11 and 13 of the Major Facilitator Superfamily of transporters

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      55424633..55436555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268655.1XP_063124725.1  monocarboxylate transporter 13 isoform X1

      UniProtKB/Swiss-Prot
      Q66HE2
      UniProtKB/TrEMBL
      A6HG29
    2. XM_039085473.2XP_038941401.1  monocarboxylate transporter 13 isoform X1

      UniProtKB/Swiss-Prot
      Q66HE2
      UniProtKB/TrEMBL
      A0A8I5ZP31, A6HG29
      Conserved Domains (1) summary
      cd17423
      Location:13392
      MFS_MCT11_13; Monocarboxylate transporters 11 and 13 of the Major Facilitator Superfamily of transporters
    3. XM_063268654.1XP_063124724.1  monocarboxylate transporter 13 isoform X1

      UniProtKB/Swiss-Prot
      Q66HE2
      UniProtKB/TrEMBL
      A6HG29
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