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    HAGLROS HAGLR opposite strand lncRNA [ Homo sapiens (human) ]

    Gene ID: 102800310, updated on 17-Sep-2024

    Summary

    Official Symbol
    HAGLROSprovided by HGNC
    Official Full Name
    HAGLR opposite strand lncRNAprovided by HGNC
    Primary source
    HGNC:HGNC:50646
    See related
    AllianceGenome:HGNC:50646
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in colon (RPKM 1.2), testis (RPKM 1.1) and 14 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See HAGLROS in Genome Data Viewer
    Location:
    2q31.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (176178166..176179009)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (176666298..176667141)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (177042894..177043737)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:177015997-177016730 Neighboring gene microRNA 10b Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:177019995-177020498 Neighboring gene homeobox D4 Neighboring gene homeobox D3 Neighboring gene Sharpr-MPRA regulatory region 15219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:177036349-177036959 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:177042291-177043085 Neighboring gene HOXD antisense growth-associated long non-coding RNA Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:177056998-177057538 Neighboring gene microRNA 7704 Neighboring gene homeobox D1 Neighboring gene ribosomal protein lateral stalk subunit P1 pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.
    EBI GWAS Catalog
    GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110457.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA780126, HY007937, HY032350

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      176178166..176179009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      176666298..176667141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)