NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001243013.2 → NP_001229942.1 ABC-type oligopeptide transporter ABCB9 isoform 6
See identical proteins and their annotated locations for NP_001229942.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (6) that is shorter than isoform 1.
- Source sequence(s)
-
AK304295, CA503047
- Consensus CDS
-
CCDS58286.1
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000441734.1, ENST00000540285.5
- Conserved Domains (1) summary
-
- TIGR00958
Location:44 → 675
- 3a01208; Conjugate Transporter-2 (CT2) Family protein
-
NM_001243014.2 → NP_001229943.1 ABC-type oligopeptide transporter ABCB9 isoform 5
See identical proteins and their annotated locations for NP_001229943.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5, also known as 12C) has an alternate 3' exon and thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (5) has a distinct and shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AB112583, AC027290, DA796102
- Consensus CDS
-
CCDS58287.1
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000456813.1, ENST00000344275.11
- Conserved Domains (1) summary
-
- cl26602
Location:44 → 681
- SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
-
NM_019624.4 → NP_062570.1 ABC-type oligopeptide transporter ABCB9 isoform 2
See identical proteins and their annotated locations for NP_062570.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to the variant 1, resulting in an isoform (2) that is shorter than isoform 1. There are no publicly available transcripts representing this variant; it is supported by experimental data in PMID:10748049.
- Source sequence(s)
-
AF216494, CA503047, DA796102
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000280559.7, ENST00000346530.9
- Conserved Domains (1) summary
-
- cl26602
Location:44 → 695
- SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
-
NM_019625.4 → NP_062571.1 ABC-type oligopeptide transporter ABCB9 isoform 1
See identical proteins and their annotated locations for NP_062571.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as 12A) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AF216494, CA503047, DA796102
- Consensus CDS
-
CCDS9241.1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000280560.8, ENST00000280560.13
- Conserved Domains (1) summary
-
- TIGR00958
Location:44 → 738
- 3a01208; Conjugate Transporter-2 (CT2) Family protein
-
NM_203444.4 → NP_982269.2 ABC-type oligopeptide transporter ABCB9 isoform 4
See identical proteins and their annotated locations for NP_982269.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (4, also known as 12B) has an alternate 3' exon and thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (4) has a distinct and shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AB112582, AC027290, DA796102
- Consensus CDS
-
CCDS58288.1
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000456375.1, ENST00000442833.6
- Conserved Domains (1) summary
-
- cl26602
Location:44 → 680
- SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
122918610..122975114 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011538095.3 → XP_011536397.1 ABC-type oligopeptide transporter ABCB9 isoform X1
See identical proteins and their annotated locations for XP_011536397.1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000376234.3, ENST00000392439.7
- Conserved Domains (1) summary
-
- TIGR00958
Location:44 → 738
- 3a01208; Conjugate Transporter-2 (CT2) Family protein
-
XM_047428624.1 → XP_047284580.1 ABC-type oligopeptide transporter ABCB9 isoform X2
-
XM_011538096.3 → XP_011536398.1 ABC-type oligopeptide transporter ABCB9 isoform X1
See identical proteins and their annotated locations for XP_011536398.1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
- UniProtKB/TrEMBL
-
Q6P2Q0
- Related
- ENSP00000440288.1, ENST00000542678.5
- Conserved Domains (1) summary
-
- TIGR00958
Location:44 → 738
- 3a01208; Conjugate Transporter-2 (CT2) Family protein
-
XM_017019103.2 → XP_016874592.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
- UniProtKB/TrEMBL
-
Q6P2Q0
- Conserved Domains (1) summary
-
- TIGR00958
Location:44 → 738
- 3a01208; Conjugate Transporter-2 (CT2) Family protein
-
XM_011538098.3 → XP_011536400.1 ABC-type oligopeptide transporter ABCB9 isoform X3
See identical proteins and their annotated locations for XP_011536400.1
- UniProtKB/TrEMBL
-
Q8NCH1
- Conserved Domains (3) summary
-
- cd03248
Location:275 → 500
- ABCC_TAP; ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C
- COG5265
Location:48 → 522
- ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
- pfam00664
Location:24 → 237
- ABC_membrane; ABC transporter transmembrane region
-
XM_047428626.1 → XP_047284582.1 ABC-type oligopeptide transporter ABCB9 isoform X4
RNA
-
XR_007063061.1 RNA Sequence
-
XR_007063062.1 RNA Sequence
-
XR_001748647.3 RNA Sequence
-
XR_001748646.3 RNA Sequence
-
XR_001748645.3 RNA Sequence
-
XR_429086.5 RNA Sequence
-
XR_007063063.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
122913851..122971746 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054371597.1 → XP_054227572.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371594.1 → XP_054227569.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371593.1 → XP_054227568.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371601.1 → XP_054227576.1 ABC-type oligopeptide transporter ABCB9 isoform X2
-
XM_054371598.1 → XP_054227573.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371595.1 → XP_054227570.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371599.1 → XP_054227574.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371596.1 → XP_054227571.1 ABC-type oligopeptide transporter ABCB9 isoform X1
- UniProtKB/Swiss-Prot
- B4E2J0, Q5W9G7, Q769F3, Q769F4, Q96AB1, Q9NP78, Q9P208
-
XM_054371600.1 → XP_054227575.1 ABC-type oligopeptide transporter ABCB9 isoform X2
-
XM_054371602.1 → XP_054227577.1 ABC-type oligopeptide transporter ABCB9 isoform X5
-
XM_054371603.1 → XP_054227578.1 ABC-type oligopeptide transporter ABCB9 isoform X3
-
XM_054371604.1 → XP_054227579.1 ABC-type oligopeptide transporter ABCB9 isoform X4
RNA
-
XR_008488556.1 RNA Sequence
-
XR_008488557.1 RNA Sequence
-
XR_008488553.1 RNA Sequence
-
XR_008488559.1 RNA Sequence
-
XR_008488555.1 RNA Sequence
-
XR_008488558.1 RNA Sequence
-
XR_008488554.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_203445.1: Suppressed sequence
- Description
- NM_203445.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.