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    LINC00523 long intergenic non-protein coding RNA 523 [ Homo sapiens (human) ]

    Gene ID: 283601, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC00523provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 523provided by HGNC
    Primary source
    HGNC:HGNC:20117
    See related
    Ensembl:ENSG00000196273 AllianceGenome:HGNC:20117
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C14orf70
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00523 in Genome Data Viewer
    Location:
    14q32.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (100657268..100672744)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (94891104..94906582)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (101123605..101139081)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903382 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9041 Neighboring gene brain enriched guanylate kinase associated Neighboring gene uncharacterized LOC124903384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101021873-101022628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101022629-101023385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101069891-101070390 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:101081529-101081726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101102218-101103218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101105157-101105658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101105659-101106158 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101111512-101112012 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:101126859-101128058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101132935-101133436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101139493-101140240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101145673-101146266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101146861-101147454 Neighboring gene uncharacterized LOC105370668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:101155275-101156090 Neighboring gene uncharacterized LOC124903385

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Downregulation of long non-coding RNAs LINC00523 and LINC00994 in type 2 diabetes in an Iranian cohort. Mansoori Z, et al. Mol Biol Rep, 2018 Oct. PMID 30043104
    2. Impaired plasma membrane localization of ubiquitin ligase complex underlies 3-M syndrome development. Wang P, et al. J Clin Invest, 2019 Jul 25. PMID 31343991, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024096.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BX161445
      Related
      ENST00000360899.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      100657268..100672744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      94891104..94906582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001007560.1: Suppressed sequence

      Description
      NM_001007560.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q86TU6.1 GenPept UniProtKB/Swiss-Prot:Q86TU6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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