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    CMKLR2-AS CMKLR2 antisense RNA [ Homo sapiens (human) ]

    Gene ID: 101669764, updated on 17-Sep-2024

    Summary

    Official Symbol
    CMKLR2-ASprovided by HGNC
    Official Full Name
    CMKLR2 antisense RNAprovided by HGNC
    Primary source
    HGNC:HGNC:48602
    See related
    MIM:617636; AllianceGenome:HGNC:48602
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GPR1AS; GPR1-AS; GPR1-AS1
    Summary
    This gene is thought to produce a non-coding RNA. It is situated adjacent to a differentially methylated region (DMR) and is imprinted and paternally expressed in the placenta. [provided by RefSeq, Nov 2015]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See CMKLR2-AS in Genome Data Viewer
    Location:
    2q33.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (206203376..206266243)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (206685283..206748163)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (207068100..207130967)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 51 Neighboring gene small nucleolar RNA, H/ACA box 41 Neighboring gene eukaryotic translation elongation factor 1 beta 2 Neighboring gene chemerin chemokine-like receptor 2 Neighboring gene RN7SK pseudogene 200 Neighboring gene ATP5PO pseudogene 1 Neighboring gene RN7SK pseudogene 260 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12267 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:207139745-207140244 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 6 Neighboring gene zinc finger DBF-type containing 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:207192998-207193988 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:207193989-207194978 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:207232447-207232644 Neighboring gene Sharpr-MPRA regulatory region 7385 Neighboring gene ACER2 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.
    EBI GWAS Catalog

    General gene information

    Other Names

    • G protein-coupled receptor 1 antisense RNA
    • GPR1 antisense RNA 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_051613.1 RefSeqGene

      Range
      5001..67868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_1105

    RNA

    1. NR_104359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB774455, AC007383, AI128443, AK002005, BC028329, CB160399, DB337034

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      206203376..206266243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_015495299.1 Reference GRCh38.p14 PATCHES

      Range
      312394..379881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      206685283..206748163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)