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    Lrrc78 leucine rich repeat containing 78 [ Mus musculus (house mouse) ]

    Gene ID: 102635744, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Lrrc78provided by MGI
    Official Full Name
    leucine rich repeat containing 78provided by MGI
    Primary source
    MGI:MGI:5579435
    See related
    Ensembl:ENSMUSG00000099564 AllianceGenome:MGI:5579435
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm28729
    Summary
    Orthologous to human LRRC78P (leucine rich repeat containing 78, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in bladder adult (RPKM 6.0), testis adult (RPKM 2.1) and 5 other tissues See more
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    Genomic context

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    See Lrrc78 in Genome Data Viewer
    Location:
    9 E3.3; 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (96368040..96407643, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (96485987..96525852, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51656 Neighboring gene STARR-positive B cell enhancer mm9_chr9:96378987-96379288 Neighboring gene STARR-seq mESC enhancer starr_24959 Neighboring gene ring finger protein 7 Neighboring gene STARR-seq mESC enhancer starr_24962 Neighboring gene STARR-seq mESC enhancer starr_24963 Neighboring gene ubiquitin domain containing 2 pseudogene Neighboring gene RAS p21 protein activator 2 Neighboring gene STARR-positive B cell enhancer mm9_chr9:96473690-96473991 Neighboring gene protein transport protein Sec61 subunit gamma-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC102635744

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370882.1 → NP_001357811.1  uncharacterized protein LOC102635744

      Status: PREDICTED

      Source sequence(s)
      AC161257
      Consensus CDS
      CCDS90644.1
      UniProtKB/TrEMBL
      A0A1B0GSW2
      Related
      ENSMUSP00000148097.2, ENSMUST00000190704.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      96368040..96407643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243952.2 → XP_030099812.1  uncharacterized protein LOC102635744 isoform X1

    2. XM_011242849.3 → XP_011241151.1  uncharacterized protein LOC102635744 isoform X1

      See identical proteins and their annotated locations for XP_011241151.1

    3. XM_006511607.2 → XP_006511670.1  uncharacterized protein LOC102635744 isoform X1

      See identical proteins and their annotated locations for XP_006511670.1

    4. XM_011242850.1 → XP_011241152.1  uncharacterized protein LOC102635744 isoform X2

      See identical proteins and their annotated locations for XP_011241152.1

    5. XM_006511609.2 → XP_006511672.1  uncharacterized protein LOC102635744 isoform X3

      See identical proteins and their annotated locations for XP_006511672.1

    Nucleotide Protein
    Heading Accession and Version

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