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    SPATA31C2 SPATA31 subfamily C member 2 [ Homo sapiens (human) ]

    Gene ID: 645961, updated on 28-Oct-2024

    Summary

    Official Symbol
    SPATA31C2provided by HGNC
    Official Full Name
    SPATA31 subfamily C member 2provided by HGNC
    Primary source
    HGNC:HGNC:24508
    See related
    Ensembl:ENSG00000177910 AllianceGenome:HGNC:24508
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM75C2
    Summary
    Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Restricted expression toward testis (RPKM 8.9) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See SPATA31C2 in Genome Data Viewer
    Location:
    9q22.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (88129305..88138475, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (100283388..100292558, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90744220..90753390, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902202 Neighboring gene uncharacterized LOC124902203 Neighboring gene RSRC1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:90794801-90795393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:90795394-90795985 Neighboring gene potassium channel tetramerization domain containing 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Clone Names

    • DKFZp434M131

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    putative spermatogenesis-associated protein 31C2
    Names
    family with sequence similarity 75, member C2
    spermatogenesis-associated protein 31C2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166137.1NP_001159609.1  putative spermatogenesis-associated protein 31C2 isoform 2

      See identical proteins and their annotated locations for NP_001159609.1

      Status: VALIDATED

      Source sequence(s)
      AK302448, AL080179, AL353726, DB061043
      Consensus CDS
      CCDS94435.1
      UniProtKB/Swiss-Prot
      B4DYI2
      Related
      ENSP00000509164.1, ENST00000675441.1
      Conserved Domains (2) summary
      pfam14650
      Location:311600
      FAM75; FAM75 family
      pfam15371
      Location:82161
      DUF4599; Domain of unknown function (DUF4599)
    2. NM_001350978.3NP_001337907.1  putative spermatogenesis-associated protein 31C2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL080179, AL353726, DB076576
      Consensus CDS
      CCDS94436.1
      UniProtKB/TrEMBL
      A0A8I5KWQ5
      Related
      ENSP00000509734.1, ENST00000324915.6
      Conserved Domains (3) summary
      pfam14650
      Location:311600
      FAM75; FAM75 family
      pfam15371
      Location:83163
      DUF4599; Domain of unknown function (DUF4599)
      cl26464
      Location:122365
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      88129305..88138475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      100283388..100292558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)