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    8030451A03Rik RIKEN cDNA 8030451A03 gene [ Mus musculus (house mouse) ]

    Gene ID: 100504061, updated on 17-Aug-2024

    Summary

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    Official Symbol
    8030451A03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 8030451A03 geneprovided by MGI
    Primary source
    MGI:MGI:1915353
    See related
    Ensembl:ENSMUSG00000073821 AllianceGenome:MGI:1915353
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    8030463A06Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 8030451A03Rik in Genome Data Viewer
    Location:
    4 C1; 4 34.06 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (63898178..64068162)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (63984731..64148556)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_10447 Neighboring gene tumor necrosis factor (ligand) superfamily, member 8 Neighboring gene ribosomal protein L17, pseudogene 4 Neighboring gene STARR-seq mESC enhancer starr_10448 Neighboring gene STARR-seq mESC enhancer starr_10449 Neighboring gene tenascin C Neighboring gene predicted gene, 31115 Neighboring gene STARR-seq mESC enhancer starr_10450 Neighboring gene STARR-seq mESC enhancer starr_10451 Neighboring gene predicted gene 11217 Neighboring gene STARR-seq mESC enhancer starr_10452 Neighboring gene STARR-seq mESC enhancer starr_10453 Neighboring gene STARR-seq mESC enhancer starr_10454 Neighboring gene predicted gene, 23950

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_190130.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL714006, AL732556
      Related
      ENSMUST00000141428.8

    2. NR_190131.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL732556
      Related
      ENSMUST00000135042.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      63898178..64068162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001494.2: Suppressed sequence

      Description
      NM_001001494.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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