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    Wdr17 WD repeat domain 17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 364653, updated on 28-Oct-2024

    Summary

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    Symbol
    Wdr17provided by RGD
    Full Name
    WD repeat domain 17provided by RGD
    Primary source
    RGD:1590843
    See related
    EnsemblRapid:ENSRNOG00000048847 AllianceGenome:RGD:1590843
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human WDR17 (WD repeat domain 17). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Restricted expression toward (RPKM 51.3) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Wdr17 in Genome Data Viewer
    Location:
    16p11
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (43792989..43924187)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (37059923..37191125)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (39810285..39938953)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097473 Neighboring gene U6 spliceosomal RNA Neighboring gene glycoprotein m6a Neighboring gene pinin, desmosome associated protein, pseudogene 1 Neighboring gene spermatogenesis associated 4 Neighboring gene ankyrin repeat and SOCS box-containing 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    WD repeat domain 17; WD repeat-containing protein 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      43792989..43924187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008771249.4 → XP_008769471.1  WD repeat-containing protein 17 isoform X2

      See identical proteins and their annotated locations for XP_008769471.1

      UniProtKB/TrEMBL
      A0A8I6A820
      Related
      ENSRNOP00000089373.1, ENSRNOT00000098016.2
      Conserved Domains (4) summary
      COG2319
      Location:373 → 682
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:391 → 681
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:357 → 391
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:74 → 298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_017600361.3 → XP_017455850.1  WD repeat-containing protein 17 isoform X5

      UniProtKB/TrEMBL
      A0A8I6A820
      Related
      ENSRNOP00000108732.1, ENSRNOT00000159803.1

    3. XM_008771250.4 → XP_008769472.1  WD repeat-containing protein 17 isoform X4

      See identical proteins and their annotated locations for XP_008769472.1

      UniProtKB/TrEMBL
      M0R6L2
      Related
      ENSRNOP00000065064.4, ENSRNOT00000074885.4
      Conserved Domains (4) summary
      COG2319
      Location:373 → 682
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:391 → 681
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:357 → 391
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:74 → 298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_017600362.3 → XP_017455851.1  WD repeat-containing protein 17 isoform X6

      UniProtKB/TrEMBL
      M0R6L2

    5. XM_017600359.3 → XP_017455848.1  WD repeat-containing protein 17 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A820

    6. XM_003751595.6 → XP_003751643.1  WD repeat-containing protein 17 isoform X3

      See identical proteins and their annotated locations for XP_003751643.1

      UniProtKB/TrEMBL
      A0A0G2JWF6
      Related
      ENSRNOP00000069861.3, ENSRNOT00000081994.3
      Conserved Domains (4) summary
      COG2319
      Location:349 → 658
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:367 → 657
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:333 → 367
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:50 → 274
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein Strain
    Heading Accession and Version

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