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    C2h1orf56 similar to human chromosome 1 open reading frame 56 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 295265, updated on 28-Oct-2024

    Summary

    Official Symbol
    C2h1orf56provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 56provided by RGD
    Primary source
    RGD:1359334
    See related
    EnsemblRapid:ENSRNOG00000021656 AllianceGenome:RGD:1359334
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    MENT; RGD1359334
    Summary
    Predicted to be involved in regulation of cell population proliferation. Predicted to be located in extracellular region. Orthologous to human C1orf56 (chromosome 1 open reading frame 56). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Restricted expression toward (RPKM 446.4) See more
    Orthologs
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    Genomic context

    See C2h1orf56 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (185503792..185507385, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (182814794..182818387, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (196411937..196415530, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene MLLT11, transcription factor 7 cofactor Neighboring gene CDC42 small effector 1 Neighboring gene BCL2 interacting protein like Neighboring gene prune exopolyphosphatase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein MENT
    Names
    methylated in normal thymocytes protein
    uncharacterized protein C1orf56 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007638.1NP_001007639.1  protein MENT precursor

      See identical proteins and their annotated locations for NP_001007639.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083828
      UniProtKB/Swiss-Prot
      Q5XI62
      UniProtKB/TrEMBL
      A0A8L2QUG9, A6K2X5
      Related
      ENSRNOP00000059268.3, ENSRNOT00000064238.4
      Conserved Domains (1) summary
      pfam15322
      Location:31341
      PMSI1; Protein missing in infertile sperm 1, putative

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      185503792..185507385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)