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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_053156.2 RefSeqGene
- Range
-
5000..404482
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001304840.3 → NP_001291769.1 E3 ubiquitin-protein ligase HECW2 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC020571, AC074090
- UniProtKB/TrEMBL
-
A0A2C9F2N4
- Conserved Domains (4) summary
-
- pfam06390
Location:108 → 275
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- smart00119
Location:884 → 1213
- HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
- cd00078
Location:860 → 1214
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:453 → 482
- WW; WW domain
-
NM_001348768.2 → NP_001335697.1 E3 ubiquitin-protein ligase HECW2 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate exon in the 5' UTR, compared to variant 1. Both variants 1 and 3 encode the same isoform (1).
- Source sequence(s)
-
AC020571, AC068544, AC074090
- Consensus CDS
-
CCDS33354.1
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
- Related
- ENSP00000495418.1, ENST00000644978.2
- Conserved Domains (8) summary
-
- pfam06390
Location:464 → 631
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- cd08691
Location:185 → 321
- C2_NEDL1-like; C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)
- smart00456
Location:987 → 1018
- WW; Domain with 2 conserved Trp (W) residues
- PHA03169
Location:584 → 794
- PHA03169; hypothetical protein; Provisional
- cd00078
Location:1216 → 1570
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:809 → 838
- WW; WW domain
- pfam16562
Location:45 → 162
- HECW_N; N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
- pfam18436
Location:915 → 981
- HECW1_helix; Helical box domain of E3 ubiquitin-protein ligase HECW1
-
NM_020760.4 → NP_065811.1 E3 ubiquitin-protein ligase HECW2 isoform 1
See identical proteins and their annotated locations for NP_065811.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Both variants 1 and 3 encode the same isoform (1).
- Source sequence(s)
-
AC020571, AC068544, AC074090
- Consensus CDS
-
CCDS33354.1
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
- Related
- ENSP00000260983.2, ENST00000260983.8
- Conserved Domains (8) summary
-
- pfam06390
Location:464 → 631
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- cd08691
Location:185 → 321
- C2_NEDL1-like; C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)
- smart00456
Location:987 → 1018
- WW; Domain with 2 conserved Trp (W) residues
- PHA03169
Location:584 → 794
- PHA03169; hypothetical protein; Provisional
- cd00078
Location:1216 → 1570
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:809 → 838
- WW; WW domain
- pfam16562
Location:45 → 162
- HECW_N; N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
- pfam18436
Location:915 → 981
- HECW1_helix; Helical box domain of E3 ubiquitin-protein ligase HECW1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
196194072..196593554 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006712646.4 → XP_006712709.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
- Conserved Domains (6) summary
-
- pfam06390
Location:471 → 638
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- cd08691
Location:185 → 321
- C2_NEDL1-like; C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)
- PHA03169
Location:591 → 801
- PHA03169; hypothetical protein; Provisional
- cd00078
Location:1223 → 1577
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:816 → 845
- WW; WW domain
- pfam16562
Location:45 → 164
- HECW_N; N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
-
XM_047445197.1 → XP_047301153.1 E3 ubiquitin-protein ligase HECW2 isoform X2
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
-
XM_024453020.2 → XP_024308788.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
- Related
- ENSP00000495504.1, ENST00000644030.1
- Conserved Domains (6) summary
-
- pfam06390
Location:471 → 638
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- cd08691
Location:185 → 321
- C2_NEDL1-like; C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)
- PHA03169
Location:591 → 801
- PHA03169; hypothetical protein; Provisional
- cd00078
Location:1223 → 1577
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:816 → 845
- WW; WW domain
- pfam16562
Location:45 → 164
- HECW_N; N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
-
XM_024453021.2 → XP_024308789.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
- Conserved Domains (6) summary
-
- pfam06390
Location:471 → 638
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- cd08691
Location:185 → 321
- C2_NEDL1-like; C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)
- PHA03169
Location:591 → 801
- PHA03169; hypothetical protein; Provisional
- cd00078
Location:1223 → 1577
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:816 → 845
- WW; WW domain
- pfam16562
Location:45 → 164
- HECW_N; N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
-
XM_047445198.1 → XP_047301154.1 E3 ubiquitin-protein ligase HECW2 isoform X2
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
-
XM_047445195.1 → XP_047301151.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_047445196.1 → XP_047301152.1 E3 ubiquitin-protein ligase HECW2 isoform X2
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
-
XM_047445194.1 → XP_047301150.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_006712648.5 → XP_006712711.1 E3 ubiquitin-protein ligase HECW2 isoform X3
- Conserved Domains (7) summary
-
- pfam06390
Location:340 → 507
- NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
- cd08691
Location:54 → 190
- C2_NEDL1-like; C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)
- smart00119
Location:1116 → 1445
- HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
- cd00078
Location:1092 → 1446
- HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
- pfam00397
Location:685 → 714
- WW; WW domain
- pfam12446
Location:556 → 651
- DUF3682; Protein of unknown function (DUF3682)
- pfam16562
Location:1 → 33
- HECW_N; N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
196678133..197077648 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054343177.1 → XP_054199152.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_054343184.1 → XP_054199159.1 E3 ubiquitin-protein ligase HECW2 isoform X2
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
-
XM_054343179.1 → XP_054199154.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_054343178.1 → XP_054199153.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_054343183.1 → XP_054199158.1 E3 ubiquitin-protein ligase HECW2 isoform X2
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
-
XM_054343181.1 → XP_054199156.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_054343180.1 → XP_054199155.1 E3 ubiquitin-protein ligase HECW2 isoform X1
- UniProtKB/TrEMBL
-
A0A2R8Y6F3
-
XM_054343182.1 → XP_054199157.1 E3 ubiquitin-protein ligase HECW2 isoform X2
- UniProtKB/Swiss-Prot
- B8ZZB4, Q17RT5, Q68DF8, Q9NPS9, Q9P2P5
-
XM_054343185.1 → XP_054199160.1 E3 ubiquitin-protein ligase HECW2 isoform X3