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    rps2 ribosomal protein S2 [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100304556, updated on 20-Aug-2024

    Summary

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    Gene symbol
    rps2
    Gene description
    ribosomal protein S2
    See related
    EnsemblRapid:ENSIPUG00020023072
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See rps2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 2 NC_030417.2 (27198299..27201056, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 2 NC_030417.1 (12273553..12283042)

    Chromosome 2 - NC_030417.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L3-like Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 Neighboring gene immunoglobulin superfamily member 6 Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translational machinery of channel catfish: I. A transcriptomic approach to the analysis of 32 40S ribosomal protein genes and their expression. Karsi A, et al. Gene, 2002 May 29. PMID 12095691
    2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    3. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS5; 40S ribosomal protein S2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200138.1 → NP_001187067.1  small ribosomal subunit protein uS5

      See identical proteins and their annotated locations for NP_001187067.1

      Status: PROVISIONAL

      Source sequence(s)
      AF402809
      UniProtKB/Swiss-Prot
      Q90YS3
      Related
      ENSIPUP00020045059.1, ENSIPUT00020055504.1
      Conserved Domains (3) summary
      PTZ00070
      Location:16 → 263
      PTZ00070; 40S ribosomal protein S2; Provisional
      pfam00333
      Location:87 → 151
      Ribosomal_S5; Ribosomal protein S5, N-terminal domain
      pfam03719
      Location:170 → 237
      Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030417.2 Reference Coco_2.0 Primary Assembly

      Range
      27198299..27201056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017482553.2 → XP_017338042.1  40S ribosomal protein S2 isoform X1

      UniProtKB/TrEMBL
      A0A2D0S5P1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q90YS3.1 GenPept UniProtKB/Swiss-Prot:Q90YS3

    Gene LinkOut

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