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    rpl21 ribosomal protein L21 [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100304535, updated on 12-Sep-2024

    Summary

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    Gene symbol
    rpl21
    Gene description
    ribosomal protein L21
    See related
    EnsemblRapid:ENSIPUG00020015430
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Also known as
    rl21
    Orthologs
    human zebrafish all
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    Genomic context

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    See rpl21 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 23 NC_030438.2 (5090491..5094218)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 23 NC_030438.1 (5058836..5062567)

    Chromosome 23 - NC_030438.2Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 12 Neighboring gene ubiquitin specific peptidase 12a Neighboring gene general transcription factor IIIA, b Neighboring gene ligand of numb-protein X 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translational machinery of channel catfish: II. Complementary DNA and expression of the complete set of 47 60S ribosomal proteins. Patterson A, et al. Gene, 2003 Feb 27. PMID 12609735
    2. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
    3. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL21
    Names
    60S ribosomal protein l21
    NP_001187047.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200118.1 → NP_001187047.1  large ribosomal subunit protein eL21

      See identical proteins and their annotated locations for NP_001187047.1

      Status: PROVISIONAL

      Source sequence(s)
      AF401575
      UniProtKB/TrEMBL
      Q90YU7
      Related
      ENSIPUP00020030625.1, ENSIPUT00020036377.1
      Conserved Domains (1) summary
      PTZ00189
      Location:1 → 160
      PTZ00189; 60S ribosomal protein L21; Provisional

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030438.2 Reference Coco_2.0 Primary Assembly

      Range
      5090491..5094218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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